BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB017H03SP1|AL427219
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1145 935 0.0
>3x_Contig1145
Length = 5226
Score = 935 bits (471), Expect = 0.0
Identities = 504/513 (98%), Gaps = 2/513 (0%)
Strand = Plus / Plus
Query: 468 gaaacatttcccacaaataggggcaggttgatcgttgctctatcacagtcattctcaata 527
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gaaacatttcc-acaaataggggcaggttgatcgttgctctatcacagtcattctcaata 73
Query: 528 gtatctgaagttgatgtattcattgctttggagttttcttcagtatttcgtcttaccatt 587
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 gtatctgaggttgatgtattcattgctttggagttttcttcagtatttcgtcttaccatt 133
Query: 588 ccacacattaattcgttacactcaagtctagatgaaatggtttccttttccccataaacg 647
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 134 ccacacattaattcgttacactcaagtctagatgagatggtttccttttccccataaacg 193
Query: 648 gtatcattgtaatcaggtatacgtaccaactttaccagctttcaagaacttagccatttt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gtatcattgtaatcaggtatacgtaccaactttaccagctttcaagaacttagccatttt 253
Query: 708 cgattgatcttgtctactttgctttgaactatagctcgaatcactactattgaattgctt 767
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 254 cgattgatcttgtctactttgctttgaactatagctcgaatcactactattgagttgctt 313
Query: 768 gtacatactattaaatattgaaaagttgattactttttacctctaatattgaagaagcat 827
|||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 314 gtacatactattaagtattgagaagttgattactttttacctctaatattgaggaagcat 373
Query: 828 acagctcccagacatcgccaaacctttgggaatcgtggaaagtcaacgactgactggtcc 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 acagctcccagacatcgccaaacctttgggaatcgtggaaagtcaacgactgactggtcc 433
Query: 888 agtgtctcgcctggaggtgcgcacgcccagagacactgaaactgatcctggagggagagg 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agtgtctcgcctggaggtgcgcacgcccagagacactgaaactgatcctggagggagagg 493
Query: 948 ttggg-mgaagcgtgcaggaggctagaaggaga 979
||||| ||||||||||||||||||||||||||
Sbjct: 494 ttgggcagaagcgtgcaggaggctagaaggaga 526
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6870
Number of Sequences: 1807
Number of extensions: 6870
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)